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Here are two examples of easy scripts to do. One of them is for Unix/Linux machines and the other one is for MS-Dos or Windows.
#!/bin/bash
basename = $1
directory = $2
ProblemDirectory = $3
# OutputFile: $1.log
IT IS USED BY GiD
# ErrorFile: $1.err
IT IS USED BY GiD
rm -f $basename.flavia.res
$ProblemDirectory/myprogram $basename
mv $basename.post $basename.flavia.res
rem basename=%1
JUST INFORMATIVE
rem directory=%2
JUST INFORMATIVE
rem ProblemDirectory=%3
JUST INFORMATIVE
rem OutputFile: %1.log
IT IS USED BY GiD
rem ErrorFile: %1.err
IT IS USED BY GiD
del %1.flavia.res%3\myprogram %1
move %1.post %1.flavia.res